PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502611.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 345aa    MW: 38586.4 Da    PI: 5.017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13107158155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  XP_004502611.1 107 QKVSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 158
                     6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.41E-14104162No hitNo description
SuperFamilySSF474591.44E-17105180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-13106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDESLYDIFE DRTEFGNNHF GSTDDDLFAI LESLEDFTDF PLIKEAEAVT TPKENEDTSR  60
LVSQKSTTSS NFPQQDSETE LETCPKSKRQ KLTPTLVEEQ INSDGQQKVS HITVERNRRK  120
QMNEHLSVLR SLMPCFYVKR GDQASIIGGV VDYINELQQL LQALEAKKQR KVYNEVLSPR  180
IVSSPRPSPL SPRKPPLSPR LNLPISPRTP TPSSPYKPRL QQSYNFNSLS PTISIPVEPS  240
PTTSSSTSSV NDNINELVAN SKSHIADVEV KFSGPHVLLK TVSQRIPGQA LKIISTLEDL  300
ALEILHVNIN CSSDDTMLNS FTIKIGIECQ LSADELAQQI QQTFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9630791e-79CT963079.4 M.truncatula DNA sequence from clone MTH2-64N20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502611.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-105SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLG7J6A10.0G7J6A1_MEDTR; Transcription factor
STRINGGLYMA04G41710.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-44bHLH family protein